ДНК-проект: общие вопросы

[asan-kaygy]

 

Цитата

 

Новости:
Возможно, будет статья по древним геномам Приамурья и одному мезолитическому геному Маньчжурии Хоутаомуга I. Образцы Бойсманской культуры обнаружены являться гаплогруппой C2b-F1396 (C-L1373).
www.seaa-web.org/conf18/ConferenceAbstracts.pdf


3. Chuan-chao WANG， Chao NING
Institution: Max Planck Institute for the Science of Human History
Title of Presentation： Ancient Genomic Evidence for the Deep Ancestry of Northeast Asia
Abstract: We generated genome-wide data from 27 ancient human samples from the Amur
River Basin in the Russian Far East and the Houtaomuga cemetery in northeast China dating
to around 9,000 BCE to 1,000 CE. The Mesolithic Houtaomuga and Neolithic Boisman
culture provides an unmixed surrogate for an ancient Northeast Asian lineage as does the
sample from the Iron Age Yankovsky culture and some present-day Tungusic-speaking
populations, and the paternal Y chromosome of Boisman samples belongs to C2b-F1396,
which is the predominant lineage in present-day Mongolic, Tungusic, and some Turkic
speaking populations, documenting a continuous presence of this type of ancestry in
Northeast Asia stretching back at least 11,000 years. Some present-day Tungusic-speaking
populations in China are genetically similar to Han Chinese with a proportionate ancestry
relationship ranging from 13% to 50%, which occurred at least by the Early Medieval period
and argues the Han expansion left a significant genetic signature in Northeast Asia.

Отметим, что присутствие C-L1373 в Северо-Восточной Евразии является древним. Ее ветвь C-P39 обнаружена среди американских индейцев:
High-resolution SNPs and microsatellite haplotypes point to a single, recent entry of Native American Y chromosomes into the Americas.

 

 

Оттуда же:

Исследуется древняя ДНК из Кореи и Японии:

4. Choongwon JEONG， Mark HUDSON, Martine ROBBEETS

Institution: Max Planck Institute for the Science of Human History

Title of Presentation： Genetic Footprint of the Introduction of Rice Farming into the Korean Peninsula and Japanese Archipelago

Abstract:
The appearance of the Yayoi culture in 2,300 yBP or earlier, likely from the Korean peninsula, coincides with the introduction of paddy field rice farming and metallurgy to the Japanese archipelago. A replacement of the preceding Jomon people by Yayoi provides a clear case of farming-associated demic diffusion, contributing to about 80% of the ancestry in contemporary Japanese. However, the genetic origins of Jomon and Yayoi people have not been thoroughly studied using genome-scale data.
For the genomic analysis, we collected prehistoric human remains from Korea and Japan. We are currently processing Neolithic samples from the southern shore of Korea and from Miyakojima in southern Japan, predating the Yayoi culture. By generating genome-wide data, we expect to understand the nature of prehistoric Korean and Japanese gene pools. This will provide a baseline to detect temporal changes and the spatial substructure in their gene pools.

Исследуется древняя ДНК бронзового века Монголии:

5. Christina WARINNER

Institution: Max Planck Institute for the Science of Human History

Title  of  Presentation：Population Migration and Dairy Pastoralism on the Bronze Age Mongolian Steppe

Abstract:
The  steppe belt that extends across Eurasia was the primary corridor of Late Neolithic and Bronze Age migrations that reshaped the genetics of Europe and Asia and dispersed the Indo-European language family. Beginning in the Late Neolithic, a new and highly mobile pastoralist society formed on the Western Steppe. These steppe herders expanded both westwards, contributing to the Corded Ware culture of Eastern and Central Europe, and eastwards, contributing to the mobile pastoralist Afanasevo, Sintashta, and Andronovo cultures. The eastern extent of this Western steppe herder expansion is not well defined. Here we investigate genome-wide ancestry data obtained from 20 Late Bronze Age khirigsuur burials from Khovsgol, Mongolia and further investigate evidence for dairy pastoralism by LC-MS/MS analysis of dental calculus. Overall, we observe limited Western Steppe gene flow into Late Bronze Age Mongolia, but a robust adoption of Western domesticates and ruminant dairying.

 

 

[кылышбай]

изначально думал речь про R1b а ок-ся мтДНК:

https://video.img.ria.ru/Volume42/Flv/2018/03/01/2018_03_01_Colonization_sumrev55.bhb.mp4

Семью из 13 миллионов людей нашли ученые (на Tengrinews.kz)

[Курсант]

02.07.2018 в 12:05, кылышбай сказал:

изначально думал речь про R1b а ок-ся мтДНК:

https://video.img.ria.ru/Volume42/Flv/2018/03/01/2018_03_01_Colonization_sumrev55.bhb.mp4

Семью из 13 миллионов людей нашли ученые (на Tengrinews.kz)

из ваших?  уфулл с возрастом тмсра 1600лет

https://yfull.com/tree/N-Y16323/

[Samtat]

МолГен -всё ?

[Курсант]

3 минуты назад, Samtat сказал:

МолГен -всё ?

работает уже , утром не фурычил 

[asan-kaygy]

 

Цитата

https://www.nature.com/articles/s41431-018-0211-6

Paternal origin of Paleo-Indians in Siberia: insights from Y-chromosome sequences

    Lan-Hai Wei, Ling-Xiang Wang, Shao-Qing Wen, Shi Yan, Rebekah Canada, Vladimir Gurianov, Yun-Zhi Huang, Swapan Mallick, Alessandro Biondo, Amy O’Leary, Chuan-Chao Wang, Yan Lu, Chao Zhang, Li Jin, Shuhua Xu & Hui Li 

European Journal of Human Genetics (2018) | Download Citation

Abstract

The expansion of modern humans to the American continent after the Last Glacial Maximum led the way to the present-day distribution of American aborigines. Recent advances in autosomal DNA research and expanded testing of mtDNA lineages has provided a clearer picture of the number and timing of founding lineages. However, both autosomal DNA and mtDNA research have provided unresolved competing theories between the short-term and the long-term models of the Beringian standstill hypothesis. Further, the source of founding paternal lineages of American aborigines and their relationship with ancient Siberia populations remains ambiguous. In this study, we reanalyzed a 7.0 Mbp region of 132 paternal Y-chromosome sequences, including 39 newly reported ones, of male samples from American aborigines and Eurasian populations. Among Eurasian samples, we identified Y-chromosome branches that are most closely related to known American aborigine founding lineages, that is, Q1-L804 links to Q1-M3, Q1-L330 links to Q1-Z780, Q1-M120 links to Q1-B143, and C2-F1756 links to C2-P39. The revised phylogenetic tree and age estimates indicate a narrow timeframe (~15.3–14.3 kya) for the upper time limit of human entry to the American continent. Our analysis suggests that the in situ differentiation of Q-M242 in Central Eurasia and South Siberia region gave rise to numerous sub-lineages older than 15.3 kya, and the founding of Paleo-Indian paternal lineages is part of the great Q1-L53 diffusion throughout the Eurasia after the Last Glacial Maximum. The results of our study will assist in future studies of the history of modern populations in Eurasia and the Americas.

 

[asan-kaygy]

https://warhead.su/2018/07/10/pervyy-genotsid-v-istorii-kak-kromanontsy-istrebili-neandertaltsev

[asan-kaygy]

New FGC publication with collaborators: 
Leon Kull (FGC team member) and Greg Magoon (Full Genomes bioinformatics consultant and employee at Aerodyne) worked on the paper along with other collaborators:

Haplogroup J-Z640 - Genetic Insight into the Levantine Bronze Age

Michael Waas1,2, Doron Yacobi3, Leon Kull 4, Vadim Urasin5, Gregory R. Magoon 6, Wim Penninx7, Adam Brown2, Ines Nogueiro8,9

1.Jewish History, University of Haifa, Haifa, Israel , 2.Avotaynu Dna, Avotaynu Dna, Teaneck, Nj, United States , 3.Independent, Independent, Tel Aviv, Israel , 4.Full Genomes Corp., Full Genomes Corp., Rockville, Md, United States , 5.Researcher, Y full.com, Moscow, Russian Federation , 6.Aerodyne Research, Inc., Aerodyne Research, Inc., Billerica, Ma, United States , 7.Independent, Independent Genetic Genealogy Researcher, Delft, Netherlands , 8.Institute of Molecular Pathology and Immunology of the University of Porto (Ipatimup), Universidade Do Porto, Porto, Portugal , 9.Instituto De Investigação E Inovação Em Saúde, Universidade Do Porto, Porto, Portugal

Haplogroup J-Z640 is a Y chromosome lineage found most notably, in several minority groups within the Near East that have undergone tremendous selection pressure in both the recent and distant past such as the Samaritans, Druze, Armenians and Jews. The evolution of J-Z640 and the common origin of the diverse ethno-religious groups within it has never been studied. We compiled a STR (short tandem repeat) and SNP (single nucleotide polymorphism) dataset of 130 known or predicted J-Z640 samples among the customers of FamilyTreeDNA and FullGenomes Corporation, as well as publicly available samples. Amongst these, we analyzed the results of 41 samples that had undergone Next-Generation Sequencing and 32 samples that had undergone SNP testing using Sanger Sequencing. From this data, we constructed a J-Z640 phylogenetic tree. Our data revealed that J-Z640 originated during the Middle Bronze Age, most likely in the Levant. During the period 2100 BCE - 1200 BCE the haplogroup rapidly expanded with multiple ancient branches surviving to the present, evidencing population growth. Further population expansion, and contraction, were also observed in later periods. Based on its geographic dispersal and age of the haplogroup and its subclades, the founder population most likely belonged to Canaanites found in the Levant. Following the collapse of the late Bronze age system (1200-1177 BCE), there followed a period of ‘differentiation by culture’, with many of the ancient branches surviving to the present separated along ethno-religious lines.

[Koshoj]

Где это опубликовано?

[asan-kaygy]

Перепостил с Фэйсбука

[asan-kaygy]

http://xn--c1acc6aafa1c.xn--p1ai/?page_id=30293

[asan-kaygy]

 

Цитата

http://www.ivpp.cas.cn/cbw/rlxxb/xbwzxz/201805/P020180515379362334965.pdf

Citation: Liu SH, N, Yilihamu, R Bake,et al. A study of genetic diversity of three isolated populations in Xinjiang using Y-SNP[J]. Acta Anthropologica Sinica, 2018, 37(1): 146-156

DOI: 10.16359/j.cnki.cn11-1963/q.2017.0067

A  study  of  genetic  diversity  of  three  isolated  populations in Xinjiang using Y-SNP

LIU Shuhu, NIZAM Yilihamu, RABIYAMU Bake, ABDUKERAM Bupatima, DOLKUN Matyusup

College of the Life Sciences and Technology, Xinjiang University, Urumqi 830046

Abstract:  The Keriyan, Lopnur and Dolan peoples are isolated populations with sparse numbers living  in  the  western  border  desert  of  our  country.  By  sequencing  and  typing  the  complete  Y-chromosome of 179 individuals in these three isolated populations, all mutations and SNPs in the Y-chromosome and their corresponding haplotypes were obtained. Types and frequencies of each  haplotype  were  analyzed  to  investigate  genetic  diversity  and  genetic  structure  in  the  three  isolated populations. The results showed that 12 haplogroups were detected in the Keriyan with high frequencies of the J2a1b1 (25.64%), R1a1a1b2a (20.51%), R2a (17.95%) and R1a1a1b2a2 (15.38%) groups. Sixteen haplogroups were noted in the Lopnur with the following frequencies: J2a1  (43.75%),  J2a2  (14.06%),  R2  (9.38%)  and  L1c  (7.81%).  Forty  haplogroups  were  found  in  the  Dolan,  noting  the  following  frequencies:  R1b1a1a1  (9.21%),  R1a1a1b2a1a  (7.89%),  R1a1a1b2a2b (6.58%) and C3c1 (6.58%). These data show that these three isolated populations have  a  closer  genetic  relationship  with  the  Uygur,  Mongolian  and  Sala  peoples.  In  particular,  there  are  no  significant  differences  in  haplotype  and  frequency  between  the  three  isolated  populations and Uygur (f=0.833, p=0.367). In addition, the genetic haplotypes and frequencies in the three isolated populations showed marked Eurasian mixing illustrating typical characteristics of Central Asian populations.

 

[Идикут]

On 9/8/2018 at 9:53 AM, asan-kaygy said:

 

 

https://www.familytreedna.com/products/y-dna#/compare

анализ 37 коротких тандемных повторов - достаточно? 

[asan-kaygy]

1 час назад, Идикут сказал:

https://www.familytreedna.com/products/y-dna#/compare

анализ 37 коротких тандемных повторов - достаточно? 

Достаточно

[Курсант]

3 часа назад, Идикут сказал:

https://www.familytreedna.com/products/y-dna#/compare

анализ 37 коротких тандемных повторов - достаточно? 

полгода назад вы писали что сдали днк-текст с гедматчем и пообещали ознакомить результатами через два месяца , прошло полгода с тех пор

[Идикут]

On 9/30/2018 at 12:23 PM, asan-kaygy said:

Достаточно

есть ли резон покупать более дорогой тест (67 маркеров)?

[Идикут]

On 9/30/2018 at 2:19 PM, Курсант said:

полгода назад вы писали что сдали днк-текст с гедматчем и пообещали ознакомить результатами через два месяца , прошло полгода с тех пор

Все верно. :) После двух месяцев ожидания, мой образец в 23andme не приняли сказав, что посылка была отправлена из третьей страны. Жду черную пятницу, отправлю образец другу в США. Если базовая Y-ДНК будет интересная, продолжу тестирование в familytreedna.

[asan-kaygy]

9 часов назад, Идикут сказал:

есть ли резон покупать более дорогой тест (67 маркеров)?

Чем больше тем глубже. Если деньги позволяют надо брать побольше маркеров

[asan-kaygy]

https://www.bbc.com/russian/features-45880161

[Туран]

 

На днях, на популярном российском аналитическом интернет-канале «День ТВ» было размещено интервью с доктором химических наук, профессором МГУ им. М.В. Ломоносова, профессором биохимии Гарвардского университета, биохимиком и автором нового научного направления «ДНК-генеалогия» Анатолием Алексеевичем Клесовым (Клёсовым).
Передачу «Запрещённая история: славяне и тюрки сквозь тысячелетия» можно посмотреть тут.

В передаче профессор А.Клесов озвучил несколько интересных постулатов, основанных на его многолетних исследованиях и трудах различных ученых. Он рассказал о том, как урезается история славян и тюрок, что почему-то условно академические научные круги между собой договорились не вести историю славян ранее 6 века н.э., а историю тюрок ранее начала нашей эры. http://vzglyad.az/mobile/news.php?id=104337&lang=ru&fbclid=IwAR1dyUQHlYw_-cDICp-0Y8cgWiJnHq-7dPAqZ99zwqCZeFJkSn0UAQrmULU

[asan-kaygy]

Он вечно переобувается. Славянам одно говорит тюркам другое евреям третье

[Туран]

34 минуты назад, asan-kaygy сказал:

Он вечно переобувается. Славянам одно говорит тюркам другое евреям третье

здесь он говорит одно и славянам и тюркам.

с ним согласен, в принципе я так и думал, особенно насчет прототюрков

[asan-kaygy]

14 часов назад, Туран сказал:

здесь он говорит одно и славянам и тюркам.

с ним согласен, в принципе я так и думал, особенно насчет прототюрков

А вы почитайте что он раньше говорил про тюрков

Что это эрбины и баски их родня

А кыргызов он выводил от славянина 8 века.

Каждый раз он меняет свою точку зрения в зависимости от аудитории

Бред сивой кобылы

[asan-kaygy]

К примеру

http://pereformat.ru/2014/11/klyosov-penzev/

[Туран]

1 час назад, asan-kaygy сказал:

К примеру

http://pereformat.ru/2014/11/klyosov-penzev/

М.б. он говорил о прототюрках как родне баскам? По ссылке ничего такое не увидел, не знаю у кого бред, но только не у него